Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs111601937 | chr16:20705241 | A/G | 4.15E-5 | 486 | 16.38 | 14.5 | 17.65 | KM Plot |
| THCA | rs111604160 | chr12:98980788 | A/G | 6.16E-6 | 470 | 15.07 | 17.42 | 32.03 | KM Plot |
| THCA | rs111608226 | chr14:59684637 | G/A | 0 | 487 | 15.9 | 16.4 | 3.53 | KM Plot |
| THCA | rs111635506 | chr8:52443243 | G/A | 0 | 482 | 16.37 | 14.67 | 7.3 | KM Plot |
| THCA | rs111638521 | chr10:104658172 | G/A | 2.83E-8 | 490 | 15.32 | 17.33 | 19.1 | KM Plot |
| THCA | rs111639800 | chr16:2945581 | A/G | 0.000162 | 485 | 15.2 | 17.13 | 15.4 | KM Plot |
| THCA | rs111668583 | chr10:104970156 | C/A | 3.33E-7 | 473 | 15.32 | 17.68 | 10.17 | KM Plot |
| THCA | rs1116748 | chr3:139275442 | T/C | 1.08E-5 | 478 | 16.02 | 17 | 14.27 | KM Plot |
| THCA | rs11167744 | chr5:140801104 | T/C | 7.54E-7 | 489 | 15.98 | 15.25 | 21.33 | KM Plot |
| THCA | rs111679420 | chr8:144568825 | G/A | 3.04E-9 | 479 | 16.67 | 14.77 | 12.67 | KM Plot |
| THCA | rs11168034 | chr5:147527112 | C/T | 0.000307 | 490 | 13.7 | 16.52 | 16.57 | KM Plot |
| THCA | rs11168783 | chr12:49300061 | T/C | 0.000313 | 485 | 16.8 | 16.2 | 13.93 | KM Plot |
| THCA | rs111693938 | chr5:96208030 | C/A | 3.31E-6 | 487 | 15.17 | 16.9 | 20.83 | KM Plot |
| THCA | rs11170082 | chr12:52694609 | C/T | 1.6E-8 | 490 | 15.7 | 16.22 | 17 | KM Plot |
| THCA | rs11170421 | chr12:53506365 | A/G | 3.63E-11 | 482 | 16.27 | 15.83 | 7.43 | KM Plot |